Publications by GMB Students

Publications on which a GMB student was first or co-first author (indicated by *) are listed below.
All GMB student authors are highlighted.

2019

• R.L. Armstrong, T.J.R. Penke, S.K. Chao, G.M. Gentile, B.D. Strahl, A.G. Matera, D.J. McKay, and R.J. Duronio (2019). H3K9 promotes under-replication of pericentromeric heterochromatin in Drosophila salivary gland polytene chromosomes. Genes (Basel) 10: doi: 10.3390/genes10020093.
• A.R. Coffey, M. Kanke, T.L. Smallwood, J. Albright, W. Pitman, R.Z. Gharaibeh, K. Hua, E. Gertz, S.B. Biddinger, R.E. Temel, D. Pomp, P. Sethupathy, and B.J. Bennett (2019). microRNA-146a association with the cardiometabolic disease risk factor TMAO. Physiol Genomics doi: 10.1152/physiolgenomics.00079.2018.
• E.R. Hinkle, H.J. Wiedner, A.J. Black, and J. Giudice (2019). RNA processing in skeletal muscle biology and disease. Transcription 10: 1-20. doi: 10.1080/21541264.2018.1558677.
• C.E. Trincot, W. Xu, H. Zhang, M.R. Kulikauskas, T.G. Caranasos, B.C. Jensen, A. Sabine, T.V. Petrova, and K.M. Caron (2019). Adrenomedullin induces cardiac lymphangiogenesis after myocardial infarction and regulates cardiac edema via connexin 43. Circ Res 124: 101-113. doi: 10.1161/CIRCRESAHA.118.313835.

2018

• R.L. Armstrong*, T.J.R. Penke*, B.D. Strahl, A.G. Matera, D.J. McKay, D.M. MacAlpine, and R.J. Duronio (2018). Chromatin conformation and transcriptional activity are permissive regulators of DNA replication initiation in Drosophila. Genome Res 28: 1688-1700. doi: 10.1101/gr.239913.118.
• S.H. Azam, M. Smith, V. Somasundaram, and C.V. Pecot (2018). Incorporating pericytes into an endothelial cell bead sprouting assay. J Vis Exp doi: 10.3791/57309.
• M.M. Brady, S. McMahan, and J. Sekelsky (2018). Loss of Drosophila Mei-41/ATR alters meiotic crossover patterning. Genetics 208: 579-588. doi: 10.1534/genetics.117.300634.
• S.E. Brnich, E.A. Rivera-Munoz, and J.S. Berg (2018). Quantifying the potential of functional evidence to reclassify variants of uncertain significance in the categorical and Bayesian interpretation frameworks. Hum Mutat 39: 1531-1541. doi: 10.1002/humu.23609.
• M.E. Cannon and K.L. Mohlke (2018). Deciphering the emerging complexities of molecular mechanisms at GWAS Loci. Am J Hum Genet 103: 637-653. doi: 10.1016/j.ajhg.2018.10.001.
• A.M. Chiarella, A.L. Quimby, M. Mehrab-Mohseni, B. Velasco, S.K. Kasoji, I.J. Davis, P.A. Dayton, N.A. Hathaway, and S.G. Pattenden (2018). Cavitation enhancement increases the efficiency and consistency of chromatin fragmentation from fixed cells for downstream quantitative applications. Biochemistry 57: 2756-2761. doi: 10.1021/acs.biochem.8b00075.
• A.M. Chiarella, T.A. Wang, K.V. Butler, J. Jin, and N.A. Hathaway (2018). Repressing gene transcription by redirecting cellular machinery with chemical epigenetic modifiers. J Vis Exp doi: 10.3791/58222.
• K.M. Gray, K.A. Kaifer, D. Baillat, Y. Wen, T.R. Bonacci, A.D. Ebert, A.C. Raimer, A.M. Spring, S.T. Have, J.J. Glascock, K. Gupta, G.D. Van Duyne, M.J. Emanuele, A.I. Lamond, E.J. Wagner, C.L. Lorson, and A.G. Matera (2018). Self-oligomerization regulates stability of survival motor neuron protein isoforms by sequestering an SCF(Slmb) degron. Mol Biol Cell 29: 96-110. doi: 10.1091/mbc.E17-11-0627.
• L.T. Laudermilk, J.M. Thomas, and S.N. Kelada (2018). Differential regulation of Zfp30 expression in murine airway epithelia through altered binding of ZFP148 to rs51434084. G3 (Bethesda) 8: 687-693. doi: 10.1534/g3.117.300507.
• J. Lawrimore, A. Doshi, B. Friedman, E. Yeh, and K. Bloom (2018). Geometric partitioning of cohesin and condensin is a consequence of chromatin loops. Mol Biol Cell 29: 2737-2750. doi: 10.1091/mbc.E18-02-0131.
• R.C. McMullan, M.T. Ferris, T.A. Bell, V.D. Menachery, R.S. Baric, K. Hua, D. Pomp, A.E. Smith-Ryan, and F. Pardo-Manuel de Villena (2018). CC002/Unc females are mouse models of exercise-induced paradoxical fat response. Physiol Rep 6: e13716. doi: 10.14814/phy2.13716.
• M.P. Meers, K. Adelman, R.J. Duronio, B.D. Strahl, D.J. McKay, and A.G. Matera (2018). Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster. BMC Genomics 19: 157. doi: 10.1186/s12864-018-4510-7.
• M.P. Meers, M. Leatham-Jensen, T.J.R. Penke, D.J. McKay, R.J. Duronio, and A.G. Matera (2018). An animal model for genetic analysis of mMulti-gene families: Cloning and transgenesis of large tandemly repeated histone gene clusters. Methods Mol Biol 1832: 309-325. doi: 10.1007/978-1-4939-8663-7_17.
• R.M. Meganck, E.K. Borchardt, R.M. Castellanos Rivera, M.L. Scalabrino, J.E. Wilusz, W.F. Marzluff, and A. Asokan (2018). Tissue-dependent expression and translation of circular RNAs with recombinant AAV vectors in vivo. Mol Ther Nucleic Acids 13: 89-98. doi: 10.1016/j.omtn.2018.08.008.
• J.H. Meserve and R.J. Duronio (2018). Fate mapping during regeneration: Cells that undergo compensatory proliferation in damaged Drosophila eye imaginal discs differentiate into multiple retinal accessory cell types. Dev Biol 444: 43-49. doi: 10.1016/j.ydbio.2018.10.011.
• T.J.R. PenkeT, D.J. McKay, B.D. Strahl, A.G. Matera, and R.J. Duronio (2018). Functional redundancy of variant and canonical histone H3 lysine 9 modification in Drosophila. Genetics 208: 229-244. doi: 10.1534/genetics.117.300480.
• K.Z. Perez-Vale and M. Peifer (2018). Modulating apical-basal polarity by building and deconstructing a Yurt. J Cell Biol 217: 3772-3773. doi: 10.1083/jcb.201810059.
• P.N. Pozo, J.P. Matson, Y. Cole, K.M. Kedziora, G.D. Grant, B. Temple, and J.G. Cook (2018). Cdt1 variants reveal unanticipated aspects of interactions with Cyclin/CDK and MCM important for normal genome replication. Mol Biol Cell mbcE18040242. doi: 10.1091/mbc.E18-04-0242.
• J.S. Runge, J.R. Raab, and T. Magnuson (2018). Identification of Two distinct classes of the human INO80 complex genome-wide. G3 (Bethesda) 8: 1095-1102. doi: 10.1534/g3.117.300504.
• K.N. Schaefer, T.T. Bonello, S. Zhang, C.E. Williams, D.M. Roberts, D.J. McKay, and M. Peifer (2018). Supramolecular assembly of the beta-catenin destruction complex and the effect of Wnt signaling on its localization, molecular size, and activity in vivo. PLoS Genet 14: e1007339. doi: 10.1371/journal.pgen.1007339.
• M.B. Siegel, X. He, K.A. Hoadley, A. Hoyle, J.B. Pearce, A.L. Garrett, S. Kumar, V.J. Moylan, C.M. Brady, A.E. Van Swearingen, D. Marron, G.P. Gupta, L.B. Thorne, N. Kieran, C. Livasy, E.R. Mardis, J.S. Parker, M. Chen, C.K. Anders, L.A. Carey, and C.M. Perou (2018). Integrated RNA and DNA sequencing reveals early drivers of metastatic breast cancer. J Clin Invest 128: 1371-1383. doi: 10.1172/JCI96153.
• M.J. Slaughter, E.K. Shanle, A.W. McFadden, E.S. Hollis, L.E. Suttle, B.D. Strahl, and I.J. Davis (2018). PBRM1 bromodomains variably influence nucleosome interactions and cellular function. J Biol Chem 293: 13592-13603. doi: 10.1074/jbc.RA118.003381.
• L. Smith and P. Maddox (2018). Embryo timelapses can be compiled and quantified to understand canonical histone dynamics across multiple cell cycles. Cytoskeleton (Hoboken) doi: 10.1002/cm.21493.
• M. Tegowski and A. Baldwin (2018). Noncanonical NF-kappaB in cancer. Biomedicines 6: doi: 10.3390/biomedicines6020066.
• M. Tegowski, C. Fan, and A.S. Baldwin (2018). Thioridazine inhibits self-renewal in breast cancer cells via DRD2-dependent STAT3 inhibition, but induces a G1 arrest independent of DRD2. J Biol Chem 293: 15977-15990. doi: 10.1074/jbc.RA118.003719.
• C.M. Wilczewski, A.J. Hepperla, T. Shimbo, L. Wasson, Z.L. Robbe, I.J. Davis, P.A. Wade, and F.L. Conlon (2018). CHD4 and the NuRD complex directly control cardiac sarcomere formation. Proc Natl Acad Sci U S A 115: 6727-6732. doi: 10.1073/pnas.1722219115.
• L.A. Wylie, K.P. Mouillesseaux, D.C. Chong, and V.L. Bautch (2018). Developmental SMAD6 loss leads to blood vessel hemorrhage and disrupted endothelial cell junctions. Dev Biol 442: 199-209. doi: 10.1016/j.ydbio.2018.07.027.

2017

• B.H. Albright, C.M. Storey, G. Murlidharan, R.M. Castellanos Rivera, G.E. Berry, V.J. Madigan, and A. Asokan (2017). Mapping the structural determinants required for AAVrh.10 transport across the blood-brain barrier. Mol Ther doi: 10.1016/j.ymthe.2017.10.017.
• R. Beck, M. Styblo, and P. Sethupathy (2017). Arsenic exposure and Type 2 diabetes: microRNAs as mechanistic links? Curr Diab Rep 17: 18. doi: 10.1007/s11892-017-0845-8.
• S.P. Bellendir*, D.J. Rognstad*, L.P. Morris, G. Zapotoczny, W.G. Walton, M.R. Redinbo, D.A. Ramsden, J. Sekelsky, and D.A. Erie (2017). Substrate preference of Gen endonucleases highlights the importance of branched structures as DNA damage repair intermediates. Nucleic Acids Res 45: 5333-5348. doi: 10.1093/nar/gkx214.
• R.L. Bigler, J.W. Kamande, R. Dumitru, M. Niedringhaus, and A.M. Taylor (2017). Messenger RNAs localized to distal projections of human stem cell derived neurons. Sci Rep 7: 611. doi: 10.1038/s41598-017-00676-w.
• E.K. Borchardt, R.M. Meganck, H.A. Vincent, C.B. Ball, S.B.V. Ramos, N.J. Moorman, W.F. Marzluff, and A. Asokan (2017). Inducing circular RNA formation using the CRISPR endoribonuclease Csy4. RNA 23: 619-627. doi: 10.1261/rna.056838.116.
• D.C. Chong, Z. Yu, H.E. Brighton, J.E. Bear, and V.L. Bautch (2017). Tortuous microvessels contribute to wound healing via sprouting angiogenesis. Arterioscler Thromb Vasc Biol 37: 1903-1912. doi: 10.1161/ATVBAHA.117.309993.
• A.R. Coffey, T.L. Smallwood, J. Albright, K. Hua, M. Kanke, D. Pomp, B.J. Bennett, and P. Sethupathy (2017). Systems genetics identifies a co-regulated module of liver microRNAs associated with plasma LDL cholesterol in murine diet-induced dyslipidemia. Physiol Genomics 49: 618-629. doi: 10.1152/physiolgenomics.00050.2017.
• M.P. Conlin, D.A. Reid, G.W. Small, H.H. Chang, G. Watanabe, M.R. Lieber, D.A. Ramsden, and E. Rothenberg (2017). DNA ligase IV guides end-processing choice during nonhomologous end joining. Cell Rep 20: 2810-2819. doi: 10.1016/j.celrep.2017.08.091.
• T.A. Dinh, E.C. Vitucci, E. Wauthier, R.P. Graham, W.A. Pitman, T. Oikawa, M. Chen, G.O. Silva, K.G. Greene, M.S. Torbenson, L.M. Reid, and P. Sethupathy (2017). Comprehensive analysis of The Cancer Genome Atlas reveals a unique gene and non-coding RNA signature of fibrolamellar carcinoma. Sci Rep 7: 44653. doi: 10.1038/srep44653.
• L.J. Donoghue, A. Livraghi-Butrico, K.M. McFadden, J.M. Thomas, G. Chen, B.R. Grubb, W.K. O’Neal, R.C. Boucher, and S.N.P. Kelada (2017). Identification of trans protein QTL for secreted airway mucins in mice and a causal role for Bpifb1. Genetics 207: 801-812. doi: 10.1534/genetics.117.300211.
• J.K. Durand and A.S. Baldwin (2017). Targeting IKK and NF-kappaB for therapy. Adv Protein Chem Struct Biol 107: 77-115. doi: 10.1016/bs.apcsb.2016.11.006.
• A. Emery, S. Zhou, E. Pollom, and R. Swanstrom (2017). Characterizing HIV-1 splicing by using next-generation sequencing. J Virol 91: doi: 10.1128/JVI.02515-16.
• C.C. Fahey and I.J. Davis (2017). SETting the stage for cancer development: SETD2 and the consequences of lost methylation. Cold Spring Harb Perspect Med 7: doi: 10.1101/cshperspect.a026468.
• L. Freeman, H. Guo, C.N. David, W.J. Brickey, S. Jha, and J.P. Ting (2017). NLR members NLRC4 and NLRP3 mediate sterile inflammasome activation in microglia and astrocytes. J Exp Med 214: 1351-1370. doi: 10.1084/jem.20150237.
• M.A. Hartmann and J. Sekelsky (2017). The absence of crossovers on chromosome 4 in Drosophila melanogaster: Imperfection or interesting exception? Fly (Austin) 11: 253-259. doi: 10.1080/19336934.2017.1321181.
• T. Hatkevich and J. Sekelsky (2017). Bloom syndrome helicase in meiosis: Pro-crossover functions of an anti-crossover protein. Bioessays 39: doi: 10.1002/bies.201700073.
• T. Hatkevich*, K.P. Kohl*, S. McMahan, M.A. Hartmann, A.M. Williams, and J. Sekelsky (2017). Bloom Syndrome Helicase Promotes Meiotic Crossover Patterning and Homolog Disjunction. Curr Biol 27: 96-102. doi: 10.1016/j.cub.2016.10.055.
• C. Hodgens, Z.L. Nimchuk, and J.J. Kieber (2017). indCAPS: A tool for designing screening primers for CRISPR/Cas9 mutagenesis events. PLoS One 12: e0188406. doi: 10.1371/journal.pone.0188406.
• J.K. Holsclaw and J. Sekelsky (2017). Annealing of Complementary DNA Sequences During Double-Strand Break Repair in Drosophila Is Mediated by the Ortholog of SMARCAL1. Genetics 206: 467-480. doi: 10.1534/genetics.117.200238.
• D.M. Irvin, R.S. McNeill, R.E. Bash, and C.R. Miller (2017). Intrinsic Astrocyte Heterogeneity Influences Tumor Growth in Glioma Mouse Models. Brain Pathol 27: 36-50. doi: 10.1111/bpa.12348.
• S.L. McDaniel, A.J. Hepperla, J. Huang, R. Dronamraju, A.T. Adams, V.G. Kulkarni, I.J. Davis, and B.D. Strahl (2017). H3K36 methylation regulates nutrient stress response in Saccharomyces cerevisiae by enforcing transcriptional fidelity. Cell Rep 19: 2371-2382. doi: 10.1016/j.celrep.2017.05.057.
• S.L. McDaniel and B.D. Strahl (2017). Shaping the cellular landscape with Set2/SETD2 methylation. Cell Mol Life Sci doi: 10.1007/s00018-017-2517-x.
• M.P. Meers, T. Henriques, C.A. Lavender, D.J. McKay, B.D. Strahl, R.J. Duronio, K. Adelman, and A.G. Matera (2017). Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity. Elife 6: doi: 10.7554/eLife.23249.
• J.H. Meserve and R.J. Duronio (2017). A population of G2-arrested cells are selected as sensory organ precursors for the interommatidial bristles of the Drosophila eye. Dev Biol 430: 374-384. doi: 10.1016/j.ydbio.2017.06.023.
• .E. NesmithJ, J.C. Chappell, J.G. Cluceru, and V.L. Bautch (2017). Blood vessel anastomosis is spatially regulated by Flt1 during angiogenesis. Development 144: 889-896. doi: 10.1242/dev.145672.
• J.J. Noto, C.A. Schmidt, and A.G. Matera (2017). Engineering and expressing circular RNAs via tRNA splicing. RNA Biol 1-7. doi: 10.1080/15476286.2017.1317911.
• C.M. Parobek, J.B. Parr, N.F. Brazeau, C. Lon, S. Chaorattanakawee, P. Gosi, E.J. Barnett, L.D. Norris, S.R. Meshnick, M.D. Spring, C.A. Lanteri, J.A. Bailey, D.L. Saunders, J.T. Lin, and J.J. Juliano (2017). Partner-drug resistance and population substructuring of artemisinin-resistant Plasmodium falciparum in Cambodia. Genome Biol Evol 9: 1673-1686. doi: 10.1093/gbe/evx126.
• C.M. Parobek, F.I. Archer, M.E. DePrenger-Levin, S.M. Hoban, L. Liggins, and A.E. Strand (2017). skelesim: an extensible, general framework for population genetic simulation in R. Mol Ecol Resour 17: 101-109. doi: 10.1111/1755-0998.12607.
• B.C. Peck, A.T. Mah, W.A. Pitman, S. Ding, P.K. Lund, and P. Sethupathy (2017). Functional Transcriptomics in Diverse Intestinal Epithelial Cell Types Reveals Robust MicroRNA Sensitivity in Intestinal Stem Cells to Microbial Status. J Biol Chem 292: 2586-2600. doi: 10.1074/jbc.M116.770099.
• M.I. Pronobis, N. Deuitch, V. Posham, Y. Mimori-Kiyosue, and M. Peifer (2017). Reconstituting regulation of the canonical Wnt pathway by engineering a minimal beta-catenin destruction machine. Mol Biol Cell 28: 41-53. doi: 10.1091/mbc.E16-07-0557.
• A.C. Raimer, K.M. Gray, and A.G. Matera (2017). SMN – A chaperone for nuclear RNP social occasions? RNA Biol 14: 701-711. doi: 10.1080/15476286.2016.1236168.
• K. Rehain-Bell, A. Love, M.E. Werner, I. MacLeod, J.R. Yates, 3rd, and A.S. Maddox (2017). A Sterile 20 Family Kinase and Its Co-factor CCM-3 Regulate Contractile Ring Proteins on Germline Intercellular Bridges. Curr Biol 27: 860-867. doi: 10.1016/j.cub.2017.01.058.
• S.W. Renner, L.M. Walker, L.J. Forsberg, J.Z. Sexton, and J.E. Brenman (2017). Carbonic anhydrase III (Car3) is not required for fatty acid synthesis and does not protect against high-fat diet induced obesity in mice. PLoS One 12: e0176502. doi: 10.1371/journal.pone.0176502.
• T.S. Roman, M.E. Cannon, S. Vadlamudi, M.L. Buchkovich, B.N. Wolford, R.P. Welch, M.A. Morken, G.J. Kwon, A. Varshney, R. Kursawe, Y. Wu, A.U. Jackson, P. National Institutes of Health Intramural Sequencing Center Comparative Sequencing, M.R. Erdos, J. Kuusisto, M. Laakso, L.J. Scott, M. Boehnke, F.S. Collins, S.C.J. Parker, M.L. Stitzel, and K.L. Mohlke (2017). A Type 2 Diabetes-Associated Functional Regulatory Variant in a Pancreatic Islet Enhancer at the ADCY5 Locus. Diabetes 66: 2521-2530. doi: 10.2337/db17-0464.
• L. Smith and P.S. Maddox (2017). Reading the centromere epigenetic mark. Dev Cell 42: 110-112. doi: 10.1016/j.devcel.2017.07.011.
• N.R. Tackmann and Y. Zhang (2017). Mouse modelling of the MDM2/MDMX-p53 signalling axis. J Mol Cell Biol 9: 34-44. doi: 10.1093/jmcb/mjx006.
• C.M. Uyehara*, S.L. Nystrom*, M.J. Niederhuber, M. Leatham-Jensen, Y. Ma, L.A. Buttitta, and D.J. McKay (2017). Hormone-dependent control of developmental timing through regulation of chromatin accessibility. Genes Dev doi: 10.1101/gad.298182.117.
• M. Vitucci*, D.M. Irvin*, R.S. McNeill, R.S. Schmid, J.M. Simon, H.D. Dhruv, M.B. Siegel, A.M. Werneke, R.E. Bash, S. Kim, M.E. Berens, and C.R. Miller (2017). Genomic profiles of low-grade murine gliomas evolve during progression to glioblastoma. Neuro Oncol doi: 10.1093/neuonc/nox050.
• G. Zapotoczny and J. Sekelsky (2017). Human Cell Assays for Synthesis-Dependent Strand Annealing and Crossing over During Double-Strand Break Repair. G3 (Bethesda) 7: 1191-1199. doi: 10.1534/g3.116.037390.

2016

• G.E. Berry and A. Asokan (2016). Chemical modulation of endocytic sorting augments adeno-associated viral transduction. J Biol Chem 291: 939-47.
• G.E. Berry and A. Asokan (2016). Cellular transduction mechanisms of adeno-associated viral vectors. Curr Opin Virol 21: 54-60.
• L.C. Freeman and J.P. Ting (2016). The pathogenic role of the inflammasome in neurodegenerative diseases. J Neurochem 136 Suppl 1: 29-38.
• Y. Gao*, E. Mutter-Rottmayer*, A.M. Greenwalt*, D. Goldfarb, F. Yan, Y. Yang, R.C. Martinez-Chacin, K.H. Pearce, S. Tateishi, M.B. Major, and C. Vaziri (2016). A neomorphic cancer cell-specific role of MAGE-A4 in trans-lesion synthesis. Nat Commun 7: 12105.
• N.C. Gomez, A.J. Hepperla, R. Dumitru, J.M. Simon, F. Fang, and I.J. Davis (2016). Widespread chromatin accessibility at repetitive elements links stem cells with human cancer. Cell Rep 17: 1607-1620.
• K.E. Hacker*, C.C. Fahey*, S.A. Shinsky*, Y.J. Chiang*, J.V. DiFiore*, D.K. Jha, A.H. Vo, J.A. Shavit, I.J. Davis, B.D. Strahl, and W.K. Rathmell (2016). Structure/function analysis of recurrent mutations in SETD2 protein reveals a critical and conserved role for a SET domain residue in maintaining protein stability and histone H3 Lys-36 trimethylation. J Biol Chem 291: 21283-21295.
• T.K. Hayes, N.F. Neel, C. Hu, P. Gautam, M. Chenard, B. Long, M. Aziz, M. Kassner, K.L. Bryant, M. Pierobon, R. Marayati, S. Kher, S.D. George, M. Xu, A. Wang-Gillam, A.A. Samatar, A. Maitra, K. Wennerberg, E.F. Petricoin, 3rd, H.H. Yin, B. Nelkin, A.D. Cox, J.J. Yeh, and C.J. Der (2016). Long-term ERK inhibition in KRAS-mutant pancreatic cancer is associated with MYC degradation and senescence-like growth suppression. Cancer Cell 29: 75-89.
• M.D. Iglesia, J.S. Parker, K.A. Hoadley, J.S. Serody, C.M. Perou, and B.G. Vincent (2016). Genomic analysis of immune cell infiltrates across 11 tumor types. J Natl Cancer Inst 108:
• M.R. Irvin, D.M. Rotroff, S. Aslibekyan, D. Zhi, B. Hidalgo, A. Motsinger-Reif, S. Marvel, V. Srinivasasainagendra, S.A. Claas, J.B. Buse, R.J. Straka, J.M. Ordovas, I.B. Borecki, X. Guo, I.Y. Chen, J.I. Rotter, M.J. Wagner, and D.K. Arnett (2016). A genome-wide study of lipid response to fenofibrate in Caucasians: a combined analysis of the GOLDN and ACCORD studies. Pharmacogenet Genomics 26: 324-33.
• P.L. Leslie and Y. Zhang (2016). MDM2 oligomers: antagonizers of the guardian of the genome. Oncogene
• V.J. Madigan and A. Asokan (2016). Engineering AAV receptor footprints for gene therapy. Curr Opin Virol 18: 89-96.
• X. Meng*, N.R. Tackmann*, S. Liu, J. Yang, J. Dong, C. Wu, A.D. Cox, and Y. Zhang (2016). RPL23 links oncogenic RAS signaling to p53-mediated tumor suppression. Cancer Res 76: 5030-9.
• C.J. Miller and D.R. Matute (2016). The effect of temperature on Drosophila hybrid fitness. G3 (Bethesda)
• C.J. Miller and D.R. Matute (2016). Evolutionary genetics: reuse, recycle, converge. Curr Biol 26: R838-40.
• G. Murlidharan, A. Crowther, R.A. Reardon, J. Song, and A. Asokan (2016). Glymphatic fluid transport controls paravascular clearance of AAV vectors from the brain. JCI Insight 1: e88034.
• G. Murlidharan, K. Sakamoto, L. Rao, T. Corriher, D. Wang, G. Gao, P. Sullivan, and A. Asokan (2016). CNS-restricted transduction and CRISPR/Cas9-mediated gene deletion with an engineered AAV vector. Mol Ther Nucleic Acids 5: e338.
• C.M. Parobek, J.T. Lin, D.L. Saunders, E.J. Barnett, C. Lon, C.A. Lanteri, S. Balasubramanian, N. Brazeau, D.K. DeConti, D.L. Garba, S.R. Meshnick, M.D. Spring, C.M. Chuor, J.A. Bailey, and J.J. Juliano (2016). Selective sweep suggests transcriptional regulation may underlie Plasmodium vivax resilience to malaria control measures in Cambodia. Proc Natl Acad Sci U S A 113: E8096-E8105.
• B.C. Peck, J. Sincavage, S. Feinstein, A.T. Mah, J.G. Simmons, P.K. Lund, and P. Sethupathy (2016). miR-30 family controls proliferation and differentiation of intestinal epithelial cell models by directing a broad gene expression program that includes SOX9 and the ubiquitin ligase pathway. J Biol Chem
• T.J. Penke, D.J. McKay, B.D. Strahl, A.G. Matera, and R.J. Duronio (2016). Direct interrogation of the role of H3K9 in metazoan heterochromatin function. Genes Dev 30: 1866-80.
• P.N. Pozo and J.G. Cook (2016). Regulation and function of Cdt1; A key factor in cell proliferation and genome stability. Genes (Basel) 8: doi: 10.3390/genes8010002.
• M.I. Pronobis, N. Deuitch, and M. Peifer (2016). The Miraprep: A protocol that uses a miniprep kit and provides maxiprep yields. PLoS One 11: e0160509.
• N.E. Romero, S.W. Matson, and J. Sekelsky (2016). Biochemical activities and genetic functions of the Drosophila melanogaster Fancm helicase in DNA repair. Genetics 204: 531-541.
• J.S. Runge, J.R. Raab, and T. Magnuson (2016). Epigenetic regulation by ATP-dependent chromatin-remodeling enzymes: SNF-ing out crosstalk. Curr Top Dev Biol 117: 1-13.
• C.A. Schmidt, J.J. Noto, G.S. Filonov, and A.G. Matera (2016). A method for expressing and imaging abundant, stable, circular RNAs in vivo using tRNA splicing. Methods Enzymol 572: 215-36.
• D.W. Serber, J.S. Runge, D.U. Menon, and T. Magnuson (2016). The Mouse INO80 chromatin-remodeling complex is an essential meiotic factor for spermatogenesis. Biol Reprod 94: 8.
• L.C. Tsao, H. Guo, J. Jeffrey, J.A. Hoxie, and L. Su (2016). CCR5 interaction with HIV-1 Env contributes to Env-induced depletion of CD4 T cells in vitro and in vivo. Retrovirology 13: 22.
• L. Waldron, J.D. Steimle, T.M. Greco, N.C. Gomez, K.M. Dorr, J. Kweon, B. Temple, X.H. Yang, C.M. Wilczewski, I.J. Davis, I.M. Cristea, I.P. Moskowitz, and F.L. Conlon (2016). The cardiac TBX5 interactome reveals a chromatin remodeling network essential for cardiac septation. Dev Cell 36: 262-75.
• A.O. Whitlock, K.M. Peck, R.B. Azevedo, and C.L. Burch (2016). An evolving genetic architecture interacts with Hill-Robertson interference to determine the benefit of sex. Genetics 203: 923-36.
• D.W. Wyatt, W. Feng, M.P. Conlin, M.J. Yousefzadeh, S.A. Roberts, P. Mieczkowski, R.D. Wood, G.P. Gupta, and D.A. Ramsden (2016). Essential roles for polymerase theta-mediated end joining in the repair of chromosome breaks. Mol Cell 63: 662-73.

2015

• E.K. Borchardt, L.A. Vandoros, M. Huang, P.E. Lackey, W.F. Marzluff, and A. Asokan (2015). Controlling mRNA stability and translation with the CRISPR endoribonuclease Csy4. RNA 21: 1921-30.
• M.S. Charpentier, P. Tandon, C.E. Trincot, E.K. Koutleva, and F.L. Conlon (2015). A distinct mechanism of vascular lumen formation in Xenopus requires EGFL7. PLoS One 10: e0116086.
• K.M. Dorr, N.M. Amin, L.M. Kuchenbrod, H. Labiner, M.S. Charpentier, L.H. Pevny, A. Wessels, and F.L. Conlon (2015). Casz1 is required for cardiomyocyte G1-to-S phase progression during mammalian cardiac development. Development 142: 2037-47.
• N.C. Gomez and I.J. Davis (2015). Linking germline and somatic variation in Ewing sarcoma. Nature Genetics 47: 964-5.
• H. Kanamori*, C.M. Parobek*, D.J. Weber, D. van Duin, W.A. Rutala, B.A. Cairns, and J.J. Juliano (2015). Next-generation sequencing and comparative analysis of sequential outbreaks caused by multidrug-resistant Acinetobacter baumannii at a large academic burn center. Antimicrob Agents Chemother
• O. Karginova*, M.B. Siegel*, A.E. Van Swearingen, A.M. Deal, B. Adamo, M.J. Sambade, S. Bazyar, N. Nikolaishvili-Feinberg, R. Bash, S. O’Neal, K. Sandison, J.S. Parker, C. Santos, D. Darr, W. Zamboni, Y.Z. Lee, C.R. Miller, and C.K. Anders (2015). Efficacy of carboplatin alone and in combination with ABT888 in intracranial murine models of BRCA-mutated and BRCA-wild-type triple-negative breast cancer. Molecular Cancer Therapy 14: 920-30.
• L.E. Leopold, B.N. Heestand, S. Seong, L. Shtessel, and S. Ahmed (2015). Lack of pairing during meiosis triggers multigenerational transgene silencing in Caenorhabditis elegans. Proc Natl Acad Sci U S A 112: E2667-76.
• P.L. Leslie, H. Ke, and Y. Zhang (2015). The MDM2 RING Domain and Central Acidic Domain Play Distinct Roles in MDM2 Protein Homodimerization and MDM2-MDMX Protein Heterodimerization. J Biol Chem 290: 12941-50.
• J.H. Meserve and R.J. Duronio (2015). Scalloped and Yorkie are required for cell cycle re-entry of quiescent cells after tissue damage. Development 142: 2740-51.
• G. Murlidharan, T. Corriher, H.T. Ghashghaei, and A. Asokan (2015). Unique glycan signatures regulate adeno-associated virus tropism in the developing brain. J Virol 89: 3976-87.
• B.C. Peck, M. Weiser, S.E. Lee, G.R. Gipson, V.B. Iyer, R.B. Sartor, H.H. Herfarth, M.D. Long, J.J. Hansen, K.L. Isaacs, D.G. Trembath, R. Rahbar, T.S. Sadiq, T.S. Furey, P. Sethupathy, and S.Z. Sheikh (2015). MicroRNAs classify different disease behavior phenotypes of Crohn’s disease and may have prognostic utility. Inflamm Bowel Dis 21: 2178-87.
• K. Rehain and A.S. Maddox (2015). Neuron migration: anillin protects leading edge actin. Curr Biol 25: R423-5.
• L.F. Rizzardi, K.E. Coleman, D. Varma, J.P. Matson, S. Oh, and J.G. Cook (2015). CDK1-dependent inhibition of the E3 ubiquitin ligase CRL4CDT2 ensures robust transition from S phase to mitosis. J Biol Chem 290: 556-67.
• T.S. Roman, A.F. Marvelle, M.P. Fogarty, S. Vadlamudi, A.J. Gonzalez, M.L. Buchkovich, J.R. Huyghe, C. Fuchsberger, A.U. Jackson, Y. Wu, M. Civelek, A.J. Lusis, K.J. Gaulton, P. Sethupathy, A.J. Kangas, P. Soininen, M. Ala-Korpela, J. Kuusisto, F.S. Collins, M. Laakso, M. Boehnke, and K.L. Mohlke (2015). Multiple hepatic regulatory variants at the GALNT2 GWAS locus associated with high-density lipoprotein cholesterol. Am J Hum Genet 97: 801-15.
• E.A. Terzo, S.M. Lyons, J.S. Poulton, B.R. Temple, W.F. Marzluff, and R.J. Duronio (2015). Distinct self-interaction domains promote Multi Sex Combs accumulation in and formation of the Drosophila histone locus body. Mol Biol Cell 26: 1559-74.

2014

• A. Arreola, C.L. Cowey, J.L. Coloff, J.C. Rathmell, and W.K. Rathmell (2014). HIF1alpha and HIF2alpha exert distinct nutrient preferences in renal cells. PLoS One 9: e98705.
• B.D. Bower and J.D. Griffith (2014). TRF1 and TRF2 differentially modulate Rad51-mediated telomeric and nontelomeric displacement loop formation in vitro. Biochemistry (Aug 21 epub).
• M.S. Charpentier and F.L. Conlon (2014). Cellular and molecular mechanisms underlying blood vessel lumen formation. Bioessays 36: 251-259.
• J.S. Damrauer, K.A. Hoadley, D.D. Chism, C. Fan, C.J. Tiganelli, S.E. Wobker, J.J. Yeh, M.I. Milowsky, G. Iyer, J.S. Parker, and W.Y. Kim (2014). Intrinsic subtypes of high-grade bladder cancer reflect the hallmarks of breast cancer biology. Proc Natl Acad Sci USA 111: 3110-3115.
• B. Zhou*, J.S. Damrauer*, S.T. Bailey, T. Hadzic, Y. Jeong, K. Clark, C. Fan, L. Murphy, C.Y. Lee, M.A. Troester, C.R. Miller, J. Jin, D. Darr, C.M. Perou, R.L. Levine, M. Diehn, and W.Y. Kim (2014). Erythropoietin promotes breast tumorigenesis through tumor-initiating cell self-renewal. J Clin Invest 124: 553-63.
• J. Ellis, E.M. Lange, J. Li, J. Dupuis, J. Baumert, J.D. Walston, B.J. Keating, P. Durda, E.R. Fox, C.D. Palmer, Y.A. Meng, T. Young, D.N. Farlow, R.B. Schnabel, C.S. Marzi, E. Larkin, L.W. Martin, J.C. Bis, P. Auer, V.S. Ramachandran, S.B. Gabriel, M.S. Willis, J.S. Pankow, G.J. Papanicolaou, J.I. Rotter, C.M. Ballantyne, M.D. Gross, G. Lettre, J.G. Wilson, U. Peters, W. Koenig, R.P. Tracy, S. Redline, A.P. Reiner, E.J. Benjamin, and L.A. Lange (2014). Large multiethnic candidate gene study for C-reactive protein levels: identification of a novel association at CD36 in African Americans. Human Genetics 133: 985-995.
• J.M. Simon*, K.E. Hacker*, D. Singh, A.R. Brannon, J.S. Parker, M. Weiser, T.H. Ho, P.F. Kuan, E. Jonasch, T.S. Furey, J.F. Prins, J.D. Lieb, W.K. Rathmell, and I.J. Davis (2014). Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects. Genome Research 24: 241-250.
• Y. He, L. Tollini, T.H. Kim, Y. Itahana, and Y. Zhang (2014). The anaphase-promoting complex/cyclosome is an E3 ubiquitin ligase for Mdm2. Cell Cycle 13: 2101-2109.
• M.D. Iglesia, B.G. Vincent, J.S. Parker, K.A. Hoadley, L.A. Carey, C.M. Perou, and J.S. Serody (2014). Prognostic B-cell signatures using mRNA-seq in patients with subtype-specific breast and ovarian cancer. Clinical Cancer Research 20: 3818-3829.
• W.R. Jeck and N.E. Sharpless (2014). Detecting and characterizing circular RNAs. Nature Biotechnology 32: 453-461.
• W.R. Jeck, J. Parker, C.C. Carson, J.M. Shields, M.J. Sambade, E.C. Peters, C.E. Burd, N.E. Thomas, D.Y. Chiang, W. Liu, D.A. Eberhard, D. Ollila, J. Grilley-Olson, S. Moschos, D.N. Hayes, and N.E. Sharpless (2014). Targeted next generation sequencing identifies clinically actionable mutations in patients with melanoma. Pigment Cell Melanoma Res 27: 653-63.
• J.R. Kulzer, M.L. Stitzel, M.A. Morken, J.R. Huyghe, C. Fuchsberger, J. Kuusisto, M. Laakso, M. Boehnke, F.S. Collins, and K.L. Mohlke (2014). A common functional regulatory variant at a Type 2 diabetes locus upregulates ARAP1 expression in the pancreatic beta cell. American J Human Genetics 94: 186-197.
• M.C. LaFave*, S.L. Andersen*, E.P. Stoffregen, J.K. Holsclaw, K.P. Kohl, L.J. Overton and J. Sekelsky (2014) Sources and structures of mitotic crossovers that arise when BLM helicase is absent in Drosophila. Genetics 196: 107-18.
• C.M. Parobek, L.Y. Jiang, J.C. Patel, M.J. Alvarez-Martinez, J.M. Miro, W. Worodria, A. Andama, S. Fong, L. Huang, S.R. Meshnick, S.M. Taylor, and J.J. Juliano (2014). A multilocus microsatellite genotyping array to investigate the genetic epidemiology of Pneumocystis jirovecii. J Clinical Microbiology 52: 1391-9..
• C.M. Parobek, J.A. Bailey, N.J. Hathaway, D. Socheat, W.O. Rogers, and J.J. Juliano (2014). Differing patterns of selection and geospatial genetic diversity within two leading Plasmodium vivax candidate vaccine antigens. PLoS Neglected Tropical Diseases 8: e2796.
• C.L. Kurtz*, B.C. Peck*, E.E. Fannin, C. Beysen, J. Miao, S.R. Landstreet, S. Ding, V. Turaga, P.K. Lund, S. Turner, S.B. Biddinger, K.C. Vickers and P. Sethupathy (2014) microRNA-29 fine-tunes the expression of key FOXA2-activated lipid metabolism genes and is dysregulated in animal models of insulin resistance and diabetes. Diabetes 63: 3141-3148.
• K. Praveen, Y. Wen, K.M. Gray, J.J. Noto, A.R. Patlolla, G.D. Van Duyne, and A.G. Matera (2014). SMA-causing missense mutations in survival motor neuron (Smn) display a wide range of phenotypes when modeled in Drosophila. PLoS Genetics 10: e1004489.
• M. Simon, P. Sarkies, K. Ikegami, A.-L. Doebley, D. Goldstein, J. Mitchell, A. Sakaguchi, E.A. Miska, and S. Ahmed (2014). Reduced insulin/IGF-1 signaling restores germ cell immortality to Caenorhabditis elegans Piwi mutants. Cell Reports 7: 762-773.
  
• L. Tollini, A. Jin, J. Park, Y. Zhang (2014). Regulation of p53 by Mdm2 E3 ligase function is dispensable in embryogenesis and development but essential in response to DNA damage. Cancer Cell 26: 245-247.
• C.A. Waters, N.T. Strande, J.M. Pryor, C.N. Strom, P. Mieczkowski, M.D. Burkhalter, S. Oh, B.F. Qaqish, D.T. Moore, E.A. Hendrickson, and D.A. Ramsden (2014). The fidelity of the ligation step determines how ends are resolved during nonhomologous end joining. Nature Communications 5: 4286.
• C.A. Waters, N.T. Strande, D.W. Wyatt, J.M. Pryor, and D.A. Ramsden (2014). Nonhomologous end joining: A good solution for bad ends. DNA Repair 17: 39-51.
• R.L. Williams, Jr., J. Starmer, J.W. Mugford, J.M. Calabrese, P. Mieczkowski, D. Yee, and T. Magnuson (2014). fourSig: a method for determining chromosomal interactions in 4C-Seq data. Nucleic Acids Res 42: e68.
• G.G. Wozniak and B.D. Strahl (2014). Catalysis-dependent stabilization of Bre1 fine-tunes histone H2B ubiquitylation to regulate gene transcription. Genes & Development 28: 1647-1652.
• G.G. Wozniak and B.D. Strahl (2014). Hitting the ‘mark’: Interpreting lysine methylation in the context of active transcription. Biochim Biophys Acta

2013

• S.P. Bellendir and J. Sekelsky (2013). An elegans solution for crossover formation. PLoS Genetics 9: e1003658.
• J.D. Calaway, A.B. Lenarcic, J.P. Didion, J. R. Wang, J.B. Searle, L. McMillan, W. Valdar and F. Pardo-Manuel de Villena (2013) Genetic architecture of skewed x inactivation in the laboratory mouse. PLoS Genetics 9: e1003853.
• M.S. Charpentier*, K.S. Christine*, N.M. Amin, K.M. Dorr, E.J. Kushner, V.L. Bautch, J.M. Taylor, and F.L. Conlon (2013). CASZ1 promotes vascular assembly and morphogenesis through the direct regulation of an EGFL7/RhoA-mediated pathway. Developmental Cell 25: 132-143.
• M.S. Charpentier, K.M. Dorr, and F.L. Conlon (2013). Transcriptional regulation of blood vessel formation: The role of the CASZ1/Egfl7/RhoA pathway. Cell Cycle 12: 2165-2166.
• M.S. Charpentier and F.L. Conlon (2013) Cellular and molecular mechanisms underlying blood vessel lumen formation. Bioessays
• M.S. Charpentier, J.M. Taylor and F.L. Conlon (2013) The CASZ1/Egfl7 transcriptional pathway is required for RhoA expression in vascular endothelial cells. Small GTPases 4:
• M.J. Cooper, N.J. Cox, E.I. Zimmerman, B. J. Dewar, J.S. Duncan, M.C. Whittle, T. A. Nguyen, L. S. Jones, S. Ghose Roy, D. M. Smalley, P. F. Kuan, K. L. Richards, R. I. Christopherson, J. Jin, S.V. Frye, G.L. Johnson, A.S. Baldwin and L.M. Graves (2013) Application of multiplexed kinase inhibitor beads to study kinome adaptations in drug-resistant leukemia. PLoS One 8: e66755.
• D.C. Croteau-Chonka, L.A. Lange, N.R. Lee, L.S. Adair, and K.L. Mohlke (2013). Replication of LIN28B SNP association with age of menarche in young Filipino women. Pediatric Obesity 5: e50-53.
• S.C. Hanna, B. Krishnan, S.T. Bailey, S.J. Moschos, P.F. Kuan, T. Shimamura, L.D. Osborne, M.B. Siegel, L.M. Duncan, E.T. O’Brien, 3rd, R. Superfine, C.R. Miller, M.C. Simon, K.K. Wong and W.Y. Kim (2013) HIF1alpha and HIF2alpha independently activate SRC to promote melanoma metastases. J Clinical Investigations 123: 2078-93.
• T.K. Hayes and C.J. Der (2013). Mutant and wild-type Ras: Co-conspirators in cancer. Cancer Discovery 3: 24-26.
• I.B. Hilton, J.M. Simon, J.D. Lieb, I.J. Davis, B. Damania and D.P. Dittmer (2013) The open chromatin landscape of Kaposi’s sarcoma-associated herpesvirus. J Virology 87: 11831-42.
• W.R. Jeck, J.A. Sorrentino, K. Wang, M.K. Slevin, C.E. Burd, J. Liu, W.F. Marzluff and N.E. Sharpless (2013) Circular RNAs are abundant, conserved, and associated with ALU repeats. RNA 19: 141-57.
• S.H. Kim, C.E. Schmitt, M.J. Woolls, M.B. Holland, J.D. Kim, and S.W. Jin (2013). Vascular endothelial growth factor signaling regulates the segregation of artery and vein via ERK activity during vascular development. Biochem Biophys Research Comm 430: 1212-1216.
• K.P. Kohl and J. Sekelsky (2013). Meiotic and mitotic recombination in meiosis. Genetics 194: 327-334.
• K.R. Lane, Y. Yu, P.E. Lackey, X. Chen, W.F. Marzluff, and J.G. Cook (2013). Cell cycle-regulated protein abundance changes in synchronously proliferating HeLa cells include regulation of pre-mRNA splicing proteins. PLoS One 8: e58456.
• C.R. Lickwar, F. Mueller, and J.D. Lieb (2013). Genome-wide measurement of protein-DNA binding dynamics using competition ChIP. Nature Protocols 8: 1337-1353.
• D.S. Lundberg, S. Yourstone, P. Mieczkowski, C.D. Jones, and J.L. Dangl (2013). Practical innovations for high-throughput amplicon sequencing. Nature Methods 10: 999-1002.
• S.L. McDaniel and B.D. Strahl (2013) Stress-free with Rpd3: a unique chromatin complex mediates the response to oxidative stress. Molecular Cell Biology 33: 3726-7.
• A.H. Natalizio and A.G. Matera (2013). Identification and characterization of Drosophila Snurportin reveals a role for the import receptor Moleskin/Importin7 in snRNP biogenesis. Molecular Biology of the Cell18: 2932-42.
• N.R. Rasmussen, T.M. Wright, S.A. Brooks, K.E. Hacker, Z. Debebe, A.B. Sendor, M.P. Walker, M.B. Major, J. Green, G.M. Wahl and W.K. Rathmell (2013) Receptor tyrosine kinase-like orphan receptor 2 (Ror2) expression creates a poised state of Wnt signaling in renal cancer. J Biol Chem 288: 26301-10.
• H.R. Salzler, D.C. Tatomer, P.Y. Malek, S.L. McDaniel, A.N. Orlando, W.F. Marzluff, and R.J. Duronio (2013). A sequence in the Drosophila H3-H4 Promoter triggers histone locus body assembly and biosynthesis of replication-coupled histone mRNAs. Developmental Cell 24: 623-634.
• C.E. Schmitt, M.J. Woolls and S.W. Jin (2013) Mutant-specific gene expression profiling identifies SRY-related HMG box 11b (SOX11b) as a novel regulator of vascular development in zebrafish. Molecules to Cells 35: 166-72.
• L. Shtessel, M.R. Lowden, C. Cheng, M. Simon, K. Wang, and S. Ahmed (2013). Caenorhabditis elegans POT-1 and POT-2 repress telomere maintenance pathways. G3: Genes, Genomes, and Genetics 3: 305-313.
• T.L. Smallwood, G.W. Small, S.E. Suter and K.L. Richards (2013) Expression of asparagine synthetase predicts in vitro response to L-asparaginase in canine lymphoid cell lines. Leukemia and Lymphoma
• N. Surzenko, T. Crowl, A. Bachleda, L. Langer, and L. Pevny (2013). SOX2 maintains the quiescent progenitor cell state of postnatal retinal Muller glia. Development 140: 1445-1456.
• D.T. Sweet, Z. Chen, C.S. Givens, A.P. Owens, 3rd, M. Rojas, and E. Tzima (2013). Endothelial Shc Regulates Arteriogenesis Through Dual Control of Arterial Specification and Inflammation via the Notch and Nuclear Factor-kappa-Light-Chain-Enhancer of Activated B-Cell Pathways. Circulation Research 113: 32-39.
• M. Vitucci, N.O. Karpinich, R.E. Bash, A.M. Werneke, R.S. Schmid, K.K. White, R.S. McNeill, B. Huff, S. Wang, T. Van Dyke and C.R. Miller (2013) Cooperativity between MAPK and PI3K signaling activation is required for glioblastoma pathogenesis. Neuro Oncol 15: 1317-29.

2012

• J.D. Calaway, J.I. Dominguez, M.E. Hanson, E.C. Cambranis, F. Pardo-Manuel de Villena, and E. de la Casa-Esperon (2012). Intronic parent-of-origin dependent differential methylation at the Actn1 gene is conserved in rodents but is not associated with imprinted expression. PLoS One 7: e48936.
• D.C. Croteau-Chonka, Y. Wu, Y. Li, M.P. Fogarty, L.A. Lange, C.W. Kuzawa, et al., and K.L. Mohlke (2012). Population-specific coding variant underlies genome-wide association with adiponectin level. Hum Mol Genet 21: 463-471.
• J.M. Cyphert, I.C. Allen, R.J. Church, A.M. Latour, J.N. Snouwaert, T.M. Coffman, and B.H. Koller (2012). Allergic inflammation induces a persistent mechanistic switch in thromboxane-mediated airway constriction in the mouse. Am J Physiol Lung Cell Mol Physiol 302: L140-151.
• A. Gruzdev, M. Nguyen, M. Kovarova, and B.H. Koller (2012). PGE2 through the EP4 receptor controls smooth muscle gene expression patterns in the ductus arteriosus critical for remodeling at birth. Prostaglandins Other Lipid Mediat 97: 109-119.
• W. Heavner and L. Pevny (2012). Eye development and retinogenesis. Cold Spring Harb Perspect Biol 4.
• P.R. Hesker, M. Nguyen, M. Kovarova, J.P. Ting, and B.H. Koller (2012). Genetic loss of murine pyrin, the Familial Mediterranean Fever protein, increases interleukin-1beta levels. PLoS One 7: e51105.
• I.B. Hilton and D.P. Dittmer (2012). Quantitative analysis of the bidirectional viral G-protein-coupled receptor and lytic latency-associated nuclear antigen promoter of Kaposi’s sarcoma-associated herpesvirus. J Virol 86: 9683-9695.
• W.R. Jeck, A.P. Siebold, and N.E. Sharpless (2012). Review: A meta-analysis of GWAS and age-associated diseases. Aging Cell 11: 727-731.
• K.P. Kohl, C.D. Jones, and J. Sekelsky (2012). Evolution of an MCM complex in flies that promotes meiotic crossovers by blocking BLM helicase. Science 338: 1363-1365.
• C.R. Lickwar, F. Mueller, S.E. Hanlon, J.G. McNally, and J.D. Lieb (2012). Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function. Nature 484: 251-255.
• D.S. Lundberg, S.L. Lebeis, S.H. Paredes, S. Yourstone, et al., and Jeffrey L. Dangl (2012). Defining the core Arabidopsis thaliana root microbiome. Nature 488: 86-90.
• J.H. Meserve and R.J. Duronio (2012). Atypical E2Fs drive atypical cell cycles. Nat Cell Biol 14: 1124-1125.
• K. Praveen, Y. Wen, and A.G. Matera (2012). A Drosophila model of spinal muscular atrophy uncouples snRNP biogenesis functions of survival motor neuron from locomotion and viability defects. Cell Rep 1: 624-631.
• M.I. Pronobis and M. Peifer (2012). Wnt signaling: the many interfaces of beta-catenin. Curr Biol 22: R137-139.
• E.S. Rinella, E.D. Bankaitis, and D.W. Threadgill (2012). Dietary calcium supplementation enhances efficacy but also toxicity of EGFR inhibitor therapy for colon cancer. Cancer Biol Ther 13: 130-137.
• E.S. Rinella and D.W. Threadgill (2012). Efficacy of EGFR inhibition is modulated by model, sex, genetic background and diet: implications for preclinical cancer prevention and therapy trials. PLoS One 7: e39552.
• L.F. Rizzardi, E.S. Dorn, B.D. Strahl, and J.G. Cook (2012). DNA replication origin function is promoted by H3K4 di-methylation in Saccharomyces cerevisiae. Genetics 192: 371-384.
• L.F. Rizzardi and J.G. Cook (2012). Flipping the switch from G1 to S phase with E3 ubiquitin ligases. Genes Cancer 3: 634-648.
• C.E. Schmitt, M.B. Holland, and S.W. Jin (2012). Visualizing vascular networks in zebrafish: an introduction to microangiography. Methods Mol Biol 843: 59-67.
• D.W. Serber, A. Rogala, M. Makarem, G.B. Rosson, K. Simin, V. Godfrey, T. Van Dyke, C.J. Eaves, and S.J. Bultman (2012). The BRG1 chromatin remodeler protects against ovarian cysts, uterine tumors, and mammary tumors in a lineage-specific manner. PLoS One 7: e31346.
• N. Strande, S.A. Roberts, S. Oh, E.A. Hendrickson, and D.A. Ramsden (2012). Specificity of the dRP/AP lyase of Ku promotes nonhomologous end joining (NHEJ) fidelity at damaged ends. J Biol Chem 287: 13686-13693.
• N.T. Strande, C.A. Waters, and D.A. Ramsden (2012). Resolution of complex ends by Nonhomologous end joining – better to be lucky than good? Genome Integr 3: 10.
• D.T. Sweet, Z. Chen, D.M. Wiley, V.L. Bautch, and E. Tzima (2012). The adaptor protein Shc integrates growth factor and ECM signaling during postnatal angiogenesis. Blood 119: 1946-1955.
• L.A. Tollini and Y. Zhang (2012). p53 Regulation Goes Live-Mdm2 and MdmX Co-Star: Lessons Learned from Mouse Modeling. Genes Cancer 3: 219-225.