Publications by GMB Students

Publications on which a GMB student was first or co-first author (indicated by *) are listed below.  All GMB student authors are highlighted.

2017

• R. Beck, M. Styblo, and P. Sethupathy (2017). Arsenic Exposure and Type 2 Diabetes: MicroRNAs as Mechanistic Links? Curr Diab Rep 17: 18. doi: 10.1007/s11892-017-0845-8.
• S.P. Bellendir*, D.J. Rognstad*, L.P. Morris, G. Zapotoczny, W.G. Walton, M.R. Redinbo, D.A. Ramsden, J. Sekelsky, and D.A. Erie (2017). Substrate preference of Gen endonucleases highlights the importance of branched structures as DNA damage repair intermediates. Nucleic Acids Res 45: 5333-5348. doi: 10.1093/nar/gkx214.
• E.K. Borchardt, R.M. Meganck, H.A. Vincent, C.B. Ball, S.B.V. Ramos, N.J. Moorman, W.F. Marzluff, and A. Asokan (2017). Inducing circular RNA formation using the CRISPR endoribonuclease Csy4. RNA 23: 619-627. doi: 10.1261/rna.056838.116.
• T.A. Dinh, E.C. Vitucci, E. Wauthier, R.P. Graham, W.A. Pitman, T. Oikawa, M. Chen, G.O. Silva, K.G. Greene, M.S. Torbenson, L.M. Reid, and P. Sethupathy (2017). Comprehensive analysis of The Cancer Genome Atlas reveals a unique gene and non-coding RNA signature of fibrolamellar carcinoma. Sci Rep 7: 44653. doi: 10.1038/srep44653.
• J.K. Durand and A.S. Baldwin (2017). Targeting IKK and NF-kappaB for Therapy. Adv Protein Chem Struct Biol 107: 77-115. doi: 10.1016/bs.apcsb.2016.11.006.
• A. Emery, S. Zhou, E. Pollom, and R. Swanstrom (2017). Characterizing HIV-1 Splicing by Using Next-Generation Sequencing. J Virol 91: doi: 10.1128/JVI.02515-16.
• M.A. Hartmann and J. Sekelsky (2017). The absence of crossovers on chromosome 4 in Drosophila melanogaster: Imperfection or interesting exception? Fly (Austin) 1-7. doi: 10.1080/19336934.2017.1321181.
• T. Hatkevich*, K.P. Kohl*, S. McMahan, M.A. Hartmann, A.M. Williams, and J. Sekelsky (2017). Bloom Syndrome Helicase Promotes Meiotic Crossover Patterning and Homolog Disjunction. Curr Biol 27: 96-102. doi: 10.1016/j.cub.2016.10.055.
• J.K. Holsclaw and J. Sekelsky (2017). Annealing of Complementary DNA Sequences During Double-Strand Break Repair in Drosophila Is Mediated by the Ortholog of SMARCAL1. Genetics 206: 467-480. doi: 10.1534/genetics.117.200238.
• D.M. Irvin, R.S. McNeill, R.E. Bash, and C.R. Miller (2017). Intrinsic Astrocyte Heterogeneity Influences Tumor Growth in Glioma Mouse Models. Brain Pathol 27: 36-50. doi: 10.1111/bpa.12348.
• S.L. McDaniel and B.D. Strahl (2017). Shaping the cellular landscape with Set2/SETD2 methylation. Cell Mol Life Sci doi: 10.1007/s00018-017-2517-x.
• M.P. Meers, T. Henriques, C.A. Lavender, D.J. McKay, B.D. Strahl, R.J. Duronio, K. Adelman, and A.G. Matera (2017). Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity. Elife 6: doi: 10.7554/eLife.23249.
• J.J. Noto, C.A. Schmidt, and A.G. Matera (2017). Engineering and expressing circular RNAs via tRNA splicing. RNA Biol 1-7. doi: 10.1080/15476286.2017.1317911.
• C.M. Parobek, F.I. Archer, M.E. DePrenger-Levin, S.M. Hoban, L. Liggins, and A.E. Strand (2017). skelesim: an extensible, general framework for population genetic simulation in R. Mol Ecol Resour 17: 101-109. doi: 10.1111/1755-0998.12607.
• B.C. Peck, A.T. Mah, W.A. Pitman, S. Ding, P.K. Lund, and P. Sethupathy (2017). Functional Transcriptomics in Diverse Intestinal Epithelial Cell Types Reveals Robust MicroRNA Sensitivity in Intestinal Stem Cells to Microbial Status. J Biol Chem 292: 2586-2600. doi: 10.1074/jbc.M116.770099.
• M.I. Pronobis, N. Deuitch, V. Posham, Y. Mimori-Kiyosue, and M. Peifer (2017). Reconstituting regulation of the canonical Wnt pathway by engineering a minimal beta-catenin destruction machine. Mol Biol Cell 28: 41-53. doi: 10.1091/mbc.E16-07-0557.
• N.R. Tackmann and Y. Zhang (2017). Mouse modelling of the MDM2/MDMX-p53 signalling axis. J Mol Cell Biol 9: 34-44. doi: 10.1093/jmcb/mjx006.
• C.M. Uyehara*, S.L. Nystrom*, M.J. Niederhuber, M. Leatham-Jensen, Y. Ma, L.A. Buttitta, and D.J. McKay (2017). Hormone-dependent control of developmental timing through regulation of chromatin accessibility. Genes Dev doi: 10.1101/gad.298182.117.
• M. Vitucci*, D.M. Irvin*, R.S. McNeill, R.S. Schmid, J.M. Simon, H.D. Dhruv, M.B. Siegel, A.M. Werneke, R.E. Bash, S. Kim, M.E. Berens, and C.R. Miller (2017). Genomic profiles of low-grade murine gliomas evolve during progression to glioblastoma. Neuro Oncol doi: 10.1093/neuonc/nox050.
• G. Zapotoczny and J. Sekelsky (2017). Human Cell Assays for Synthesis-Dependent Strand Annealing and Crossing over During Double-Strand Break Repair. G3 (Bethesda) 7: 1191-1199. doi: 10.1534/g3.116.037390.

2016

• G.E. Berry and A. Asokan (2016). Chemical modulation of endocytic sorting augments adeno-associated viral transduction. J Biol Chem 291: 939-47.
• G.E. Berry and A. Asokan (2016). Cellular transduction mechanisms of adeno-associated viral vectors. Curr Opin Virol 21: 54-60.
• L.C. Freeman and J.P. Ting (2016). The pathogenic role of the inflammasome in neurodegenerative diseases. J Neurochem 136 Suppl 1: 29-38.
• Y. Gao*, E. Mutter-Rottmayer*, A.M. Greenwalt*, D. Goldfarb, F. Yan, Y. Yang, R.C. Martinez-Chacin, K.H. Pearce, S. Tateishi, M.B. Major, and C. Vaziri (2016). A neomorphic cancer cell-specific role of MAGE-A4 in trans-lesion synthesis. Nat Commun 7: 12105.
• N.C. Gomez, A.J. Hepperla, R. Dumitru, J.M. Simon, F. Fang, and I.J. Davis (2016). Widespread chromatin accessibility at repetitive elements links stem cells with human cancer. Cell Rep 17: 1607-1620.
• K.E. Hacker*, C.C. Fahey*, S.A. Shinsky*, Y.J. Chiang*, J.V. DiFiore*, D.K. Jha, A.H. Vo, J.A. Shavit, I.J. Davis, B.D. Strahl, and W.K. Rathmell (2016). Structure/function analysis of recurrent mutations in SETD2 protein reveals a critical and conserved role for a SET domain residue in maintaining protein stability and histone H3 Lys-36 trimethylation. J Biol Chem 291: 21283-21295.
• T.K. Hayes, N.F. Neel, C. Hu, P. Gautam, M. Chenard, B. Long, M. Aziz, M. Kassner, K.L. Bryant, M. Pierobon, R. Marayati, S. Kher, S.D. George, M. Xu, A. Wang-Gillam, A.A. Samatar, A. Maitra, K. Wennerberg, E.F. Petricoin, 3rd, H.H. Yin, B. Nelkin, A.D. Cox, J.J. Yeh, and C.J. Der (2016). Long-term ERK inhibition in KRAS-mutant pancreatic cancer is associated with MYC degradation and senescence-like growth suppression. Cancer Cell 29: 75-89.
• >K.A. Hoadley*, *, K.L. Kanchi, C.A. Miller, L. Ding, W. Zhao, X. He, J.S. Parker, M.C. Wendl, R.S. Fulton, R.T. Demeter, R.K. Wilson, L.A. Carey, C.M. Perou, and E.R. Mardis (2016). Tumor evolution in two patients with basal-like breast cancer: A retrospective genomics study of multiple metastases. PLoS Med 13: e1002174.
• M.D. Iglesia, J.S. Parker, K.A. Hoadley, J.S. Serody, C.M. Perou, and B.G. Vincent (2016). Genomic analysis of immune cell infiltrates across 11 tumor types. J Natl Cancer Inst 108:
• M.R. Irvin, D.M. Rotroff, S. Aslibekyan, D. Zhi, B. Hidalgo, A. Motsinger-Reif, S. Marvel, V. Srinivasasainagendra, S.A. Claas, J.B. Buse, R.J. Straka, J.M. Ordovas, I.B. Borecki, X. Guo, I.Y. Chen, J.I. Rotter, M.J. Wagner, and D.K. Arnett (2016). A genome-wide study of lipid response to fenofibrate in Caucasians: a combined analysis of the GOLDN and ACCORD studies. Pharmacogenet Genomics 26: 324-33.
• P.L. Leslie and Y. Zhang (2016). MDM2 oligomers: antagonizers of the guardian of the genome. Oncogene
• V.J. Madigan and A. Asokan (2016). Engineering AAV receptor footprints for gene therapy. Curr Opin Virol 18: 89-96.
• X. Meng*, N.R. Tackmann*, S. Liu, J. Yang, J. Dong, C. Wu, A.D. Cox, and Y. Zhang (2016). RPL23 links oncogenic RAS signaling to p53-mediated tumor suppression. Cancer Res 76: 5030-9.
• C.J. Miller and D.R. Matute (2016). The effect of temperature on Drosophila hybrid fitness. G3 (Bethesda)
• C.J. Miller and D.R. Matute (2016). Evolutionary genetics: reuse, recycle, converge. Curr Biol 26: R838-40.
• G. Murlidharan, A. Crowther, R.A. Reardon, J. Song, and A. Asokan (2016). Glymphatic fluid transport controls paravascular clearance of AAV vectors from the brain. JCI Insight 1: e88034.
• G. Murlidharan, K. Sakamoto, L. Rao, T. Corriher, D. Wang, G. Gao, P. Sullivan, and A. Asokan (2016). CNS-restricted transduction and CRISPR/Cas9-mediated gene deletion with an engineered AAV vector. Mol Ther Nucleic Acids 5: e338.
• C.M. Parobek, J.T. Lin, D.L. Saunders, E.J. Barnett, C. Lon, C.A. Lanteri, S. Balasubramanian, N. Brazeau, D.K. DeConti, D.L. Garba, S.R. Meshnick, M.D. Spring, C.M. Chuor, J.A. Bailey, and J.J. Juliano (2016). Selective sweep suggests transcriptional regulation may underlie Plasmodium vivax resilience to malaria control measures in Cambodia. Proc Natl Acad Sci U S A 113: E8096-E8105.
• B.C. Peck, J. Sincavage, S. Feinstein, A.T. Mah, J.G. Simmons, P.K. Lund, and P. Sethupathy (2016). miR-30 family controls proliferation and differentiation of intestinal epithelial cell models by directing a broad gene expression program that includes SOX9 and the ubiquitin ligase pathway. J Biol Chem
• T.J. Penke, D.J. McKay, B.D. Strahl, A.G. Matera, and R.J. Duronio (2016). Direct interrogation of the role of H3K9 in metazoan heterochromatin function. Genes Dev 30: 1866-80.
• M.I. Pronobis, N. Deuitch, and M. Peifer (2016). The Miraprep: A protocol that uses a miniprep kit and provides maxiprep yields. PLoS One 11: e0160509.
• A.C. Raimer, K.M. Gray, and A.G. Matera (2016). SMN – A chaperone for nuclear RNP social occasions? RNA Biol 0.
• N.E. Romero, S.W. Matson, and J. Sekelsky (2016). Biochemical activities and genetic functions of the Drosophila melanogaster Fancm helicase in DNA repair. Genetics 204: 531-541.
• J.S. Runge, J.R. Raab, and T. Magnuson (2016). Epigenetic regulation by ATP-dependent chromatin-remodeling enzymes: SNF-ing out crosstalk. Curr Top Dev Biol 117: 1-13.
• C.A. Schmidt, J.J. Noto, G.S. Filonov, and A.G. Matera (2016). A method for expressing and imaging abundant, stable, circular RNAs in vivo using tRNA splicing. Methods Enzymol 572: 215-36.
• D.W. Serber, J.S. Runge, D.U. Menon, and T. Magnuson (2016). The Mouse INO80 chromatin-remodeling complex is an essential meiotic factor for spermatogenesis. Biol Reprod 94: 8.
• L.C. Tsao, H. Guo, J. Jeffrey, J.A. Hoxie, and L. Su (2016). CCR5 interaction with HIV-1 Env contributes to Env-induced depletion of CD4 T cells in vitro and in vivo. Retrovirology 13: 22.
• L. Waldron, J.D. Steimle, T.M. Greco, N.C. Gomez, K.M. Dorr, J. Kweon, B. Temple, X.H. Yang, C.M. Wilczewski, I.J. Davis, I.M. Cristea, I.P. Moskowitz, and F.L. Conlon (2016). The cardiac TBX5 interactome reveals a chromatin remodeling network essential for cardiac septation. Dev Cell 36: 262-75.
• A.O. Whitlock, K.M. Peck, R.B. Azevedo, and C.L. Burch (2016). An evolving genetic architecture interacts with Hill-Robertson interference to determine the benefit of sex. Genetics 203: 923-36.
• D.W. Wyatt, W. Feng, M.P. Conlin, M.J. Yousefzadeh, S.A. Roberts, P. Mieczkowski, R.D. Wood, G.P. Gupta, and D.A. Ramsden (2016). Essential roles for polymerase theta-mediated end joining in the repair of chromosome breaks. Mol Cell 63: 662-73.

2015

• E.K. Borchardt, L.A. Vandoros, M. Huang, P.E. Lackey, W.F. Marzluff, and A. Asokan (2015). Controlling mRNA stability and translation with the CRISPR endoribonuclease Csy4. RNA 21: 1921-30.
• M.S. Charpentier, P. Tandon, C.E. Trincot, E.K. Koutleva, and F.L. Conlon (2015). A distinct mechanism of vascular lumen formation in Xenopus requires EGFL7. PLoS One 10: e0116086.
• K.M. Dorr, N.M. Amin, L.M. Kuchenbrod, H. Labiner, M.S. Charpentier, L.H. Pevny, A. Wessels, and F.L. Conlon (2015). Casz1 is required for cardiomyocyte G1-to-S phase progression during mammalian cardiac development. Development 142: 2037-47.
• N.C. Gomez and I.J. Davis (2015). Linking germline and somatic variation in Ewing sarcoma. Nature Genetics 47: 964-5.
• H. Kanamori*, C.M. Parobek*, D.J. Weber, D. van Duin, W.A. Rutala, B.A. Cairns, and J.J. Juliano (2015). Next-generation sequencing and comparative analysis of sequential outbreaks caused by multidrug-resistant Acinetobacter baumannii at a large academic burn center. Antimicrob Agents Chemother
• O. Karginova*, M.B. Siegel*, A.E. Van Swearingen, A.M. Deal, B. Adamo, M.J. Sambade, S. Bazyar, N. Nikolaishvili-Feinberg, R. Bash, S. O’Neal, K. Sandison, J.S. Parker, C. Santos, D. Darr, W. Zamboni, Y.Z. Lee, C.R. Miller, and C.K. Anders (2015). Efficacy of carboplatin alone and in combination with ABT888 in intracranial murine models of BRCA-mutated and BRCA-wild-type triple-negative breast cancer. Molecular Cancer Therapy 14: 920-30.
• L.E. Leopold, B.N. Heestand, S. Seong, L. Shtessel, and S. Ahmed (2015). Lack of pairing during meiosis triggers multigenerational transgene silencing in Caenorhabditis elegans. Proc Natl Acad Sci U S A 112: E2667-76.
• P.L. Leslie, H. Ke, and Y. Zhang (2015). The MDM2 RING Domain and Central Acidic Domain Play Distinct Roles in MDM2 Protein Homodimerization and MDM2-MDMX Protein Heterodimerization. J Biol Chem 290: 12941-50.
• J.H. Meserve and R.J. Duronio (2015). Scalloped and Yorkie are required for cell cycle re-entry of quiescent cells after tissue damage. Development 142: 2740-51.
• G. Murlidharan, T. Corriher, H.T. Ghashghaei, and A. Asokan (2015). Unique glycan signatures regulate adeno-associated virus tropism in the developing brain. J Virol 89: 3976-87.
• B.C. Peck, M. Weiser, S.E. Lee, G.R. Gipson, V.B. Iyer, R.B. Sartor, H.H. Herfarth, M.D. Long, J.J. Hansen, K.L. Isaacs, D.G. Trembath, R. Rahbar, T.S. Sadiq, T.S. Furey, P. Sethupathy, and S.Z. Sheikh (2015). MicroRNAs classify different disease behavior phenotypes of Crohn’s disease and may have prognostic utility. Inflamm Bowel Dis 21: 2178-87.
• K. Rehain and A.S. Maddox (2015). Neuron migration: anillin protects leading edge actin. Curr Biol 25: R423-5.
• L.F. Rizzardi, K.E. Coleman, D. Varma, J.P. Matson, S. Oh, and J.G. Cook (2015). CDK1-dependent inhibition of the E3 ubiquitin ligase CRL4CDT2 ensures robust transition from S phase to mitosis. J Biol Chem 290: 556-67.
• T.S. Roman, A.F. Marvelle, M.P. Fogarty, S. Vadlamudi, A.J. Gonzalez, M.L. Buchkovich, J.R. Huyghe, C. Fuchsberger, A.U. Jackson, Y. Wu, M. Civelek, A.J. Lusis, K.J. Gaulton, P. Sethupathy, A.J. Kangas, P. Soininen, M. Ala-Korpela, J. Kuusisto, F.S. Collins, M. Laakso, M. Boehnke, and K.L. Mohlke (2015). Multiple hepatic regulatory variants at the GALNT2 GWAS locus associated with high-density lipoprotein cholesterol. Am J Hum Genet 97: 801-15.
• E.A. Terzo, S.M. Lyons, J.S. Poulton, B.R. Temple, W.F. Marzluff, and R.J. Duronio (2015). Distinct self-interaction domains promote Multi Sex Combs accumulation in and formation of the Drosophila histone locus body. Mol Biol Cell 26: 1559-74.

2014

• A. Arreola, C.L. Cowey, J.L. Coloff, J.C. Rathmell, and W.K. Rathmell (2014). HIF1alpha and HIF2alpha exert distinct nutrient preferences in renal cells. PLoS One 9: e98705.
• B.D. Bower and J.D. Griffith (2014). TRF1 and TRF2 differentially modulate Rad51-mediated telomeric and nontelomeric displacement loop formation in vitro. Biochemistry (Aug 21 epub).
• M.S. Charpentier and F.L. Conlon (2014). Cellular and molecular mechanisms underlying blood vessel lumen formation. Bioessays 36: 251-259.
• J.S. Damrauer, K.A. Hoadley, D.D. Chism, C. Fan, C.J. Tiganelli, S.E. Wobker, J.J. Yeh, M.I. Milowsky, G. Iyer, J.S. Parker, and W.Y. Kim (2014). Intrinsic subtypes of high-grade bladder cancer reflect the hallmarks of breast cancer biology. Proc Natl Acad Sci USA 111: 3110-3115.
• B. Zhou*, J.S. Damrauer*, S.T. Bailey, T. Hadzic, Y. Jeong, K. Clark, C. Fan, L. Murphy, C.Y. Lee, M.A. Troester, C.R. Miller, J. Jin, D. Darr, C.M. Perou, R.L. Levine, M. Diehn, and W.Y. Kim (2014). Erythropoietin promotes breast tumorigenesis through tumor-initiating cell self-renewal. J Clin Invest 124: 553-63.
• J. Ellis, E.M. Lange, J. Li, J. Dupuis, J. Baumert, J.D. Walston, B.J. Keating, P. Durda, E.R. Fox, C.D. Palmer, Y.A. Meng, T. Young, D.N. Farlow, R.B. Schnabel, C.S. Marzi, E. Larkin, L.W. Martin, J.C. Bis, P. Auer, V.S. Ramachandran, S.B. Gabriel, M.S. Willis, J.S. Pankow, G.J. Papanicolaou, J.I. Rotter, C.M. Ballantyne, M.D. Gross, G. Lettre, J.G. Wilson, U. Peters, W. Koenig, R.P. Tracy, S. Redline, A.P. Reiner, E.J. Benjamin, and L.A. Lange (2014). Large multiethnic candidate gene study for C-reactive protein levels: identification of a novel association at CD36 in African Americans. Human Genetics 133: 985-995.
• J.M. Simon*, K.E. Hacker*, D. Singh, A.R. Brannon, J.S. Parker, M. Weiser, T.H. Ho, P.F. Kuan, E. Jonasch, T.S. Furey, J.F. Prins, J.D. Lieb, W.K. Rathmell, and I.J. Davis (2014). Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects. Genome Research 24: 241-250.
• Y. He, L. Tollini, T.H. Kim, Y. Itahana, and Y. Zhang (2014). The anaphase-promoting complex/cyclosome is an E3 ubiquitin ligase for Mdm2. Cell Cycle 13: 2101-2109.
• M.D. Iglesia, B.G. Vincent, J.S. Parker, K.A. Hoadley, L.A. Carey, C.M. Perou, and J.S. Serody (2014). Prognostic B-cell signatures using mRNA-seq in patients with subtype-specific breast and ovarian cancer. Clinical Cancer Research 20: 3818-3829.
• W.R. Jeck and N.E. Sharpless (2014). Detecting and characterizing circular RNAs. Nature Biotechnology 32: 453-461.
• W.R. Jeck, J. Parker, C.C. Carson, J.M. Shields, M.J. Sambade, E.C. Peters, C.E. Burd, N.E. Thomas, D.Y. Chiang, W. Liu, D.A. Eberhard, D. Ollila, J. Grilley-Olson, S. Moschos, D.N. Hayes, and N.E. Sharpless (2014). Targeted next generation sequencing identifies clinically actionable mutations in patients with melanoma. Pigment Cell Melanoma Res 27: 653-63.
• J.R. Kulzer, M.L. Stitzel, M.A. Morken, J.R. Huyghe, C. Fuchsberger, J. Kuusisto, M. Laakso, M. Boehnke, F.S. Collins, and K.L. Mohlke (2014). A common functional regulatory variant at a Type 2 diabetes locus upregulates ARAP1 expression in the pancreatic beta cell. American J Human Genetics 94: 186-197.
• M.C. LaFave*, S.L. Andersen*, E.P. Stoffregen, J.K. Holsclaw, K.P. Kohl, L.J. Overton and J. Sekelsky (2014) Sources and structures of mitotic crossovers that arise when BLM helicase is absent in Drosophila. Genetics 196: 107-18.
• C.M. Parobek, L.Y. Jiang, J.C. Patel, M.J. Alvarez-Martinez, J.M. Miro, W. Worodria, A. Andama, S. Fong, L. Huang, S.R. Meshnick, S.M. Taylor, and J.J. Juliano (2014). A multilocus microsatellite genotyping array to investigate the genetic epidemiology of Pneumocystis jirovecii. J Clinical Microbiology 52: 1391-9..
• C.M. Parobek, J.A. Bailey, N.J. Hathaway, D. Socheat, W.O. Rogers, and J.J. Juliano (2014). Differing patterns of selection and geospatial genetic diversity within two leading Plasmodium vivax candidate vaccine antigens. PLoS Neglected Tropical Diseases 8: e2796.
• C.L. Kurtz*, B.C. Peck*, E.E. Fannin, C. Beysen, J. Miao, S.R. Landstreet, S. Ding, V. Turaga, P.K. Lund, S. Turner, S.B. Biddinger, K.C. Vickers and P. Sethupathy (2014) microRNA-29 fine-tunes the expression of key FOXA2-activated lipid metabolism genes and is dysregulated in animal models of insulin resistance and diabetes. Diabetes 63: 3141-3148.
• K. Praveen, Y. Wen, K.M. Gray, J.J. Noto, A.R. Patlolla, G.D. Van Duyne, and A.G. Matera (2014). SMA-causing missense mutations in survival motor neuron (Smn) display a wide range of phenotypes when modeled in Drosophila. PLoS Genetics 10: e1004489.
• M. Simon, P. Sarkies, K. Ikegami, A.-L. Doebley, D. Goldstein, J. Mitchell, A. Sakaguchi, E.A. Miska, and S. Ahmed (2014). Reduced insulin/IGF-1 signaling restores germ cell immortality to Caenorhabditis elegans Piwi mutants. Cell Reports 7: 762-773.
  
• L. Tollini, A. Jin, J. Park, Y. Zhang (2014). Regulation of p53 by Mdm2 E3 ligase function is dispensable in embryogenesis and development but essential in response to DNA damage. Cancer Cell 26: 245-247.
• C.A. Waters, N.T. Strande, J.M. Pryor, C.N. Strom, P. Mieczkowski, M.D. Burkhalter, S. Oh, B.F. Qaqish, D.T. Moore, E.A. Hendrickson, and D.A. Ramsden (2014). The fidelity of the ligation step determines how ends are resolved during nonhomologous end joining. Nature Communications 5: 4286.
• C.A. Waters, N.T. Strande, D.W. Wyatt, J.M. Pryor, and D.A. Ramsden (2014). Nonhomologous end joining: A good solution for bad ends. DNA Repair 17: 39-51.
• R.L. Williams, Jr., J. Starmer, J.W. Mugford, J.M. Calabrese, P. Mieczkowski, D. Yee, and T. Magnuson (2014). fourSig: a method for determining chromosomal interactions in 4C-Seq data. Nucleic Acids Res 42: e68.
• G.G. Wozniak and B.D. Strahl (2014). Catalysis-dependent stabilization of Bre1 fine-tunes histone H2B ubiquitylation to regulate gene transcription. Genes & Development 28: 1647-1652.
• G.G. Wozniak and B.D. Strahl (2014). Hitting the ‘mark’: Interpreting lysine methylation in the context of active transcription. Biochim Biophys Acta

2013

• S.P. Bellendir and J. Sekelsky (2013). An elegans solution for crossover formation. PLoS Genetics 9: e1003658.
• J.D. Calaway, A.B. Lenarcic, J.P. Didion, J. R. Wang, J.B. Searle, L. McMillan, W. Valdar and F. Pardo-Manuel de Villena (2013) Genetic architecture of skewed x inactivation in the laboratory mouse. PLoS Genetics 9: e1003853.
• M.S. Charpentier*, K.S. Christine*, N.M. Amin, K.M. Dorr, E.J. Kushner, V.L. Bautch, J.M. Taylor, and F.L. Conlon (2013). CASZ1 promotes vascular assembly and morphogenesis through the direct regulation of an EGFL7/RhoA-mediated pathway. Developmental Cell 25: 132-143.
• M.S. Charpentier, K.M. Dorr, and F.L. Conlon (2013). Transcriptional regulation of blood vessel formation: The role of the CASZ1/Egfl7/RhoA pathway. Cell Cycle 12: 2165-2166.
• M.S. Charpentier and F.L. Conlon (2013) Cellular and molecular mechanisms underlying blood vessel lumen formation. Bioessays
• M.S. Charpentier, J.M. Taylor and F.L. Conlon (2013) The CASZ1/Egfl7 transcriptional pathway is required for RhoA expression in vascular endothelial cells. Small GTPases 4:
• M.J. Cooper, N.J. Cox, E.I. Zimmerman, B. J. Dewar, J.S. Duncan, M.C. Whittle, T. A. Nguyen, L. S. Jones, S. Ghose Roy, D. M. Smalley, P. F. Kuan, K. L. Richards, R. I. Christopherson, J. Jin, S.V. Frye, G.L. Johnson, A.S. Baldwin and L.M. Graves (2013) Application of multiplexed kinase inhibitor beads to study kinome adaptations in drug-resistant leukemia. PLoS One 8: e66755.
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